readme typos
readme typo
add usearch and bowtie dependencies
Transrater class to represent all metrics
import transrater for gem
expose ivars
bump version
adjust transrater interface
bump version
transrater accepts pre-loaded reference
transrater typo
subsume Assembly into Transrate module
bump version
use ivar-converted name when setting ivar
bump version
expose ivars
fix collapse factor
include % mapping and % good
bump version
don't overwrite existing output files