New schema, variant context converter changes, and removal of old genotype converter code
Remove old variant code and add new Genotype predicate for passing filter
Test suite for new Genotype predicate
Test cases for new variant schema updates and test data changes
Update with comments from Frank
Code review feedback & updates
Merge branch 'vcf-work-schema' into vcf-work-remove-old-variant
Command line changes for new variant schema: we modify Vcf2Adam/Adam2Vcf, and remove the implementation of ComputeVariants
Merge pull request #97 from nealsid/vcf-work-schema

New schema, variant context converter changes, and removal of old genoty...
Merge branch 'vcf-work' into vcf-work-remove-old-variant
Code review updates
Merge pull request #98 from nealsid/vcf-work-remove-old-variant

Vcf work remove old variant
Merge pull request #100 from nealsid/vcf-work-variant-new-cli

CLI component changes for new variant schema
RDD functions for new variant schema
New test suites for RichADAMVariant, AdamContext, AdamVariationContext, ADAMVariantContextRDDFunctions, FieldEnumerationSuite
Remove out-of-date reference to CompareAdam
Merge branch 'master' of https://github.com/bigdatagenomics/adam into vcf-work-rdd-master-merge

Conflicts:
	adam-cli/src/main/scala/edu/berkeley/cs/amplab/adam/cli/Adam2Vcf.scala
	adam-core/src/main/scala/edu/berkeley/cs/amplab/adam/converters/VariantContextConverter.scala
	adam-core/src/main/scala/edu/berkeley/cs/amplab/adam/models/ADAMVariantContext.scala
	adam-core/src/main/scala/edu/berkeley/cs/amplab/adam/rdd/AdamContext.scala
	adam-core/src/main/scala/edu/berkeley/cs/amplab/adam/rdd/AdamRDDFunctions.scala
	adam-core/src/test/scala/edu/berkeley/cs/amplab/adam/converters/VariantContextConverterSuite.scala
	adam-core/src/test/scala/edu/berkeley/cs/amplab/adam/models/ADAMVariantContextSuite.scala
	adam-format/src/main/resources/avro/adam.avdl
Fix bad merge that missed ADAMNucleotide* types & classes
Code review changes
Fix tests & build of adam-core