:hbase
Added Region & Genotype tests
:variant
Merge branch 'develop' of github.com:jesusrodrc/java-common-libs into develop

Conflicts:
	bioformats/pom.xml
	pom.xml
Merge branch 'develop' of https://github.com/opencb/java-common-libs into develop
:outdated classes removed
Modified Generic Test
Hard and soft clipping tested
Alignment padding tested
QueryResult new constructor with ID as only argument
Soft clipping in sequence alignments properly managed
New QueryOptions constructor for initializing using a Map
VCFBedFitler: added list initialization
AlignmentRegion class stores both alignments, coverage and chr:start-end of a region
QueryResult stored object is now a List<T> instead of T, and AlignmentRegion contains a RegionCoverage instead of a Map
Merge branch 'feature/alignment-query' of https://github.com/cyenyxe/java-common-libs into develop

Conflicts:
	bioformats/pom.xml
bioformats: Uniprot JAXB parser created
Merge branch 'develop' of github.com:opencb/java-common-libs into develop
New QueryResponse class
Merge branch 'feature/alignment-query' into develop