Add item to TODO list
INSTALL_ME file still had 'README' in it
Add item to TODO list
Remove item from TODO list that was fixed in a month ago
Add function nqtl for counting no. QTL in QTL object
Add examples to help files for plotPXG and effectplot
Slight changes to help files for effectplot and plot.pxg
Add cross type "haploid"
Cosmetic changes
Add crosstype argument to read.cross
Fix "Last modified" date in fitqtl_imp.c
Deal with matrix rank stuff for fitqtl with binary outcome
Update treatment of RNG in parallel code
Revise the updateParallelRNG function to do global assign to .Random.seed
Revise scanone/scantwo parallel perms to use mclapply
Revise mqmpermutation and scanall to use mclapply rather than parLapply
Remove unnecessary qtl:::
Add function formMarkerCovar
Change version numbers and date
Reduce size of rqtltour2.pdf