fix overview piechart negative values
Merge pull request #510 from MG-RAST/develop

version 3.3.8
added user and project to job_options
fix project in pipeline options
switch from user login to user id as refrence in awe
fixed error log spam of: uninitialized value in string eq at /WebApplication.pm line 132
fixed error log spam of: uninitialized value in exists at /Analysis.pm line 1354
fixed error log spam of: uninitialized value  in string at upload.cgi line 384
Merge branch 'develop' of https://github.com/MG-RAST/MG-RAST into develop
Added min sequence count cutoff of 5, min sequence length cutoff of 1bp, and max sequence length minium requirement of 50bp. Fixed the logic for a few error messages that were probably not being displayed at times that they should be. And, disabled input checkbox for assembled data when user is not uploading a FASTA formatted file.
Merge branch 'develop' of https://github.com/MG-RAST/MG-RAST into develop
Explicitly checking for key in js array before checking its value.
Merge pull request #526 from jaredbischof/develop

Various edits.