Cdd to cog file parameter for COG_table.py script.
Cdd to cog file, to be used with COG_table.py
Merge pull request #72 from alneberg/no_eutils_cog_table

Added a cdd id to cog id mapping file, that can replace fetching accession over http.
Fix bug in COG_table if contig names contained separator
Merge pull request #73 from alneberg/no_eutils_cog_table

Fix for bug found when using contigs with separator in their names.
Add cut_up_fasta.py script
Merge pull request #74 from inodb/develop

Add cutup fasta script
Speed up with MINZ
Adding contig length weighting to Validate.pl
Small script to extract clusters as fasta
Merge branch 'no_eutils_cog_table' into extract_fasta
Merge pull request #75 from alneberg/extract_fasta

Extract fasta
Updated ClusterPlot
Merge branch 'develop' of github.com:BinPro/CONCOCT into develop
New script for calculating average coverage of cluster
Added licence and readme to manifest
Merge branch 'develop' of github.com:BinPro/CONCOCT into develop
Use read length parameter for coverage pseudo count
Updated test for cog table script to not use eutils
Merge pull request #78 from alneberg/read_length_pseudo

Use read length argument for pseudo count coverage calculation.