pulsar_pipeline_utils.py: add ability to set the --jones-model input flag. Also added ability to use the new command line args --gzip and --non-fixed-only in the parameter estimation code
pulsar_parameter_estimation_nested.c: fixed bug from last patch, which meant no sample output function was being specified for the default command line arguments
lalinference_pp_pipe, cbcBayesPPAnalysis: Add links to events used in PP
analysis
lalinference_pp_pipe: Fix mistake in which config to read
Fixed bug in cbcBayesPosToSimInspiral.py: iota, inclination != theta_jn
Fixed string formatting errors (older Python?) in cbcBayesPosToSimInspiral.py
Fixed non-ASCII character in sphericalutils.py
generate_user_env.awk: first filter out any whitespace-only lines

- Previous approach fails with POSIX awk
testComputeAntennaPattern.sh: fixed LOCALE+POSIX problems
Modify cbcBayesPostProc.py to ensure that theta_jn and iota both appear in aligned/non-spinning runs.
Changed LALInference time-marginalised likelihood to use trapezoidal rule.
pulsar_parameter_estimation_nested.c: fixed bug in ordering of recovered SNR output
initial version of workflow.py
Fixed bugs relatedt to single trigger or empty files. Optimized ReadMVSCTriggers() function.
SFTutils: new API functions for resizing SFTs

- XLALMultiSFTVectorResizeBand(), XLALSFTVectorResizeBand() and XLALSFTResizeBand()
- can either expand (and zero-pad) or 'trim' the frequency band of SFT (vectors)
- refs #1464
ComputeFstat: trim 'running-median' SFT sidebands after use

- running-median SFT sidebands can dominate the SFT frequency-band for
  moderate ~O(1e3-1e4) Fstat bin searches, which has a large impact on
  the performance of resampling-Fstat: the SFT bandwidth input to
  ComputeFstat_Resamp() directly determines the number of samples to be FFT'ed.
- this patch fixes this bottleneck by 'trimming' the SFTs back to
  their minimal required bandwidth after the running-median
  noise-floor estimation is completed.
- refs #535, #1464
Added fix for lalinferencebambimpi in p-p pipeline
LFTandTSutils: fixed documentation bug in  XLALTimeShiftSFT()

- thanks to Evan for point this out, documentation was ambigous and
  suggested opposite sign of time-shift to what's actually implemented
LFTandTSutils: minor documentation fix
Merge branch 'master' of ligo-vcs.phys.uwm.edu:/usr/local/git/lalsuite