Began to separate order-detection.
Include order 1 in ModeDecider (minor fix for most usage).
Include standard deviation.
Created AlignmentMapping, which is now a very optional component of a
Result.
Simplified some blocks of code, fixed variable names, and switched to a
simpler ConsensusDecider.
Print levels 1 and 2, not 0 and 1.
Removed debugging print statements.
updating to latest biojava - snapshot
Merge branch 'master' of github.com:rcsb/symmetry
Merge branch 'master' of https://github.com/rcsb/symmetry
Added a method CensusJob.runJob. Gave Census a storeAfpChain field.
Updated centroid ligand-finding tests. Made LigandFinder able to work
with structures other than domains.
Second iteration of AlignmentMapping, which doesn't use AFPChains.
Separated storeAfpChain and recordAlignmentMapping in CensusJob and
Census. Also uncommented CensusJob.getFractionHelical.
Merge branch 'master' of https://github.com/pwrose/symmetry into pwrose-master
fixing broken imports
update
adding Peter's pull request plus some minor fixes
 incrementing version number to match new symmetry build
Made InterfaceLigandFinder work with chains and whole PDB Ids.