Initial commit.
Changing email address to a more permanent one.
Moving parser to it's own class.
Renaming SequenceUtils class to Parser.
Changed amino acid indexing in output file to be 1-indexed. Set save dialog to suggest biasviz-output.csv as a filename.
Changed zoom buttons to icons and moved to just below the graphic area.
Removed border from graphical area and disabled scroll bars when displaying applet (works in Firefox on Mac and Safari).
Can manipulate graphical view area using mouse:
- Mouse wheel zooms in and out
- Left click and drag to pan
- changed pages to use xhtml 1.0 strict.
- filtering input through htmlspecialchars() function to clean input
Background colour for plot area is white now. Also added black border.
Off by one on plot border width.
New branch for multiple view types in BiasViz.
Initial work on allowing multiple graphical displays. Regressions from single display version exist.
Minor changes and removal of some cruft.
Raw user data entry working (somewhat) now.
Moved Plot Type combo box to top of interface.
Input files are loaded directly by the applet now. Works much better than doing
it using the HTML form as before. Need to fix UI for this still.
Brought back window slider for custom data view.
Tweaked LoaderUI minorly and changed custom data parser to allow tsv or csv.
Layout of input screen improved a fair bit.