[BAM]Implement: Various context implementation progress. Every context have now a reduction function executed when a run is performed
[BAM]Implement: Added individual context output
[BAM]Implement: Added dummy wanderer for testing purposes
[BAM]Implement: Added realign and recalibration in one execution
[BAM]Implement: Added recalibration option to realigner command line
[BAM]Fixes: Fixed termination when obtaining a truncated read in region
[BAM]Fix: Added new source files with new framework recalibrator and realigner
[BAM]Fix: Changed include in dna_aligner to new framework operations header
[BAM]Fix: Fixed recalibration collect crash when invalid alignment is processed and its length it zero
[BAM]Fix: Fixed last fix in recalibration collect
[BAM]Revision: Recalibrator 1.1.1