New "loop" for "treebest best" in case the filtering is too aggressive
updated partial schema diagrams for rel.76
Fixed empty and deprecated example (for rel76) and added documentation to new fields
Added link to whole compara schema diagram
species used in the 39way mammals EPO multiple alignments
species tree used to generate the 39-mammals EPO-lc multiple alignments.
removed file species_tree.37mammals.branch_len.nw
renamed species_tree.39mammals.branch_len.nw -> species_tree.38mammals.branch_len.nw
species tree generated from 11 fish EPO-lc MSA.
deleted:    species_tree.10fish.branch_len.nw
e76 species trees
New script to munge the trees together
Use dbIDs instead of stable IDs in codeml
Config file to run protein-trees at the EBI
updated compara tutorial in pdf format
Merge branch 'master' of https://github.com/Ensembl/ensembl-compara
Added options to convert
Added options to convert
Added content options
Added content options