Fixes to intra_substitutionS_cyclization family

Fixes to identical groups for parent and children by making parents more general:
- SJ and SsJ
- SJ-3 and SsJ-3
Fixes to intra_substitutionCS_isomerization family

Fixes to identical groups for parent and children by making parents more general:
- SJ and SsJ
Fixes to Intra_substitutionS_isomerization family

Fixes to identical groups for parent and children by making parents more general:
- SJ and SsJ
- SJ-3 and SsJ-3

Fixes to S-Cs(CtHH)C, S-Cs(CtCsH)C, S-Cs(CtCsCs)C groups which did not properly
have Ct groups in them.
Fixes to R_Addition_COm family

Fixed groups CH2CH2CH3 and CH2CH3 so that they are children of
their parent C_rad/H2/Cs

Fixed group CH[CH3]2 to to become a proper child of parent C_rad/H/NonDeC
Fixes to Birad_recombination family

Fixes to C_rad_out_OneDe/O, Cpri_rad_out_NDMustO, Cpri_rad_out_NDMustS,
and C_rad_out_OneDe/S so that they are proper children of their parents
Fixes to lone_electron_pair_bond

Fixed N3sRRR group to have R groups.
Fixed O_atom_singlet group to be O atom single rather than both 2S and 2T
Fixes to HO2_Elimination_from_PeroxyRadical family

Fixed R2OO rate rule to match the definition in groups.py

Fixed R2OO_2H_HCd group to be child of its parent R2OO_2H_HDe
Change Disproportionation training rxn to Arrhenius rather than ArrheniusEP

Currently ArrheniusEP reactions cannot be used as training rxns.  This
may be changed in the future to be more accomodating.