add chart7
fix random forests
fix call to commandArgs
add chart 7; delete dead code
catch up
start of ridge regression write up
fix random forests global RData
ridge regression
debugging
new: abstract and initial intro
initial dependencies for defense and thesis
ridge regression results
move out of thesis.Rnw
put chapters in separate files
rename to include as chapter in thesis
comment out top matter
rename as knitr input file
name chapter files as dependencies
move some common functions into thesis.Rnw
include Rnw for data munging, not tex