added new generic .my.cnf files for use on ebi-forecast and ebi-cluster
removed ggplot2 from depends
merged changes from trunk
edited write.configs to deal with leading zeros in run ids; edited pecan.SA.R, pecan.SAcalcs to handle new object names
changed paths in the batchjobs script to generic paths /home/scratch/pecan/$USER/out$DATE/ for the output
divided batchjobs into a ed2in.create and batchjobs script to facilitate re-submission of jobs; added rm *log and rm c.* before creating the ed2in files and submitting jobs
new script pecan.env.vars.sh to set environment vars used in ed2in.create and ed.batchjobs
edited pecan.send.jobs.sh to reflect separation of calls in other sh files sent to create ED2IN files and submit jobs
update from trunk
merge changes pulled from trunk
new merge from trunk
appended environment vars to ed.batchjobs and ed2in.create scripts
edited pecan.ed2in.create to reflect generic directory for output /home/scratch/pecan/$USER/out$DATE/
added lai_min = 0.01 to pecan.config.constants.R; fixed error in dtheta.q.R that reversed ucl and mean values of traits
merged with trunk
fixed broken line in write.configs.R
merge
merge with trunk
moved RMySQL to depends in DESCRIPTION file
working on pecan.send.jobs.sh still need to fix, e.g.. add a wait step while ed2in files are being written.