Code cleansing: formatting errors and redundant \

	modified:   timestream/__init__.py
	modified:   timestream/manipulate/__init__.py
	modified:   timestream/manipulate/correct_detect.py
	modified:   timestream/manipulate/pipecomponents.py
	modified:   timestream/manipulate/plantSegmenter.py
	modified:   timestream/manipulate/pot.py

The following errors were corrected:
- Incorrect indentation
- Spaces around operators (especially parentheses)
- Line spacing (esp. between classes)
- Refacoring of things with redundant backslashes
Ignore some formatting errors

	modified:   run_tests

We now ignore some errors when running flake8 in ./run_tests
Further code cleaning

Fix formatting errors, tidying some unclear code paths. No
intentional algorithmic changes.

	modified:   tests/test_logging.py
	modified:   timestream/__init__.py
	modified:   timestream/manipulate/pipecomponents.py
	modified:   timestream/manipulate/pipeline.py
	modified:   timestream/manipulate/plantSegmenter.py
	modified:   timestream/manipulate/pot.py
	modified:   timestream/parse/__init__.py
Merge pull request #127 from kdmurray91/fix/autopep8

Fix many many code quality issues.