This is the first draft of the changes to modify ddMd to include
a signature of molecules.
Reading indivitual members of the AtomContext is now available through
Context only.
Trivial
Last changes pointed out by dave has been included
The coding is done! All necessary changes have been done to make molecules
home! The code compiles on its own and it doesn't have the modifications of
External Potential!
Adding proposal for preprocessor in doc/notes/mdPp
The new chainmaker add in order to include the context for ddMd!
A new example is added as a test for context feature of the ddMd!
The example is working and producing meaningful results!
Merge pull request #23 from TaherGhasimakbari/molecule

Molecule
Editing notes on postprocessor doc/notes/mdPp
Adding resize function to DSArray.
Merge branch 'devel' into molecule
Ediiting doc blocks of angle classes (removing latex \theta)
Merge branch 'master' into molecule
Merge branch 'molecule' of github.com:/dmorse/simpatico into molecule
Superficial edits of Atom context additions.
Editing Taher's DDMD_MOLECULE branch.
Adding documentation ot AtomContext struct.
Edited ChainMaker to output species, molecule, atom ids in that order.