Removed invalid file
Fixed test
Fixed wrong logger setting each loop
Fixed run command lib option
Updated timestamp
Merge branch 'master' into dev_0_10_x

Conflicts:
	src/main/groovy/nextflow/cli/CmdRun.groovy
Removed deprecated methods: read, list
Added tuple factory methods
Docker remove property renamed to 'rm' and turned on by default
Removed deprecated code
Command line option promoted as top level option
Updated licenses
Removed file 'gradle.properties' in order to support VersionEye
Changed DockerBuilder#build() signature and fixed tests
Fixed register 'singleton' method
Minor changes