Added support for interval list files.
Allow for white space around comma-separated configuration option lists.
Added support for the GATK downsample_to_fraction option.
Added support for a further report file specifying replicate information.
Added support for interval list files.
Allow for white space around comma-separated configuration option lists.
Added support for an instance variable of Executable to control submission into the underlying DRMS.
Rename the bsf_runner.py script to bsf_run_rnaseq_cuffmerge.py to make way for a new, generic bsf_runner.py infrastructure.
Rename the self parameter of the submit method to drms, since the DRMS class is defined in another Python module.
Removed cls and self parameters from Python docstrings.
In DRMS.submit, explicitly specify the drms option, since the sub modules do not define the DRMS class.
First attempt at implementing a generic BSF Runner infrastructure