Install some base packages in vagrant

Make the environment a little more hospitable [ci skip]
Fix puppet db

Use the same database in vagrant as we do in phing basic install so the
environments are in sync. [skip ci]
Added phpmyadmin to vagrant

For ease of use I put a default install of phpmyadmin at /phpmyadmin on
the vagrant system. [skip ci]
Merge pull request #593 from jrjohnson/vagrantfix

Some improvements to vagrant