I have added all the constants and equations used by Hannah's model to describe the Glutamate-Calcium-EET process.
The program is very slow, so I think there is a mistake somewhere. Plot_test and plot_test2 contain easy plots to check the results.
Not all initial conditions used by Hannah were found, 3 out of 5 are estimated.
There is not yet a link between calcium/EET and the BK channel. (Only membrane voltage dependant)
The effect of glutamate on IP3 production is incorporated. (Rho function in getRef)
The slow speed of the program is fixed (takes 4 minutes instead of 40).
BK channel opening depends on membrane voltage and EET & Calcium concentrations.
The test_plot files are only used to create fast overviews.
A global parameter has been introduced do determine which NVU version is used. (With or without de EET/Ca2+ pathways)
In plot all corrections were made to account for the changed matrix size of the output DATA file.
Documentation for NVU 1.1 is added
Changes were made to the code to adapt for the corrections by Loes&Evert.
Final documentation files needed for NVU 1.1
New file to create all plots