Code cleaning of mqmdatatypes.cpp
Code cleaning of mqmeliminate.cpp
Code cleaning of mqmregression.cpp
Merge branch 'master' of github.com:kbroman/qtl
Merge branch 'master' of github.com:kbroman/qtl
Merge with kbroman/qtl master
Merge branch 'master' of github.com:kbroman/qtl
Adding some folders to ignore by git on windows 7
Small fix: removing an unused variable warning
Adding the verbose switch to the regression function, so we can do some tracing inside the function
Changes in compiler switches of R, broke the mqm.h file, also mqmdatatypes.cpp is affected, because we don't need the stub functions anymore
Fix for bugreport: Scott A. Woolbright, last marker always included as a cofactor, in rare circumstances
Updating the unittest to use R 3.1.0 (32 bit version)
R functions were called in standalone mode
Disabled some additional output that was not in the regression tests
Merge branch 'mqm' of git://github.com/DannyArends/qtl into danny

(resolved conflicts in src/scanone_em_covar.c)
Update version + date
inst/contrib/scripts/cleanup.sh: change directory names