Move all source files to `src`
Update build files for new `src` directory
Update OS X settings as well
Old build settings will not work now, put them on the side.
Fixed the h matrix printing

Atom configurations file and python conf-to-traj tool
resolved incompatible pointer types from issue 32
Merge branch 'src' of github.com:TuckermanGroup/PINY into src
Add a water bulk example
Merge pull request #41 from TuckermanGroup/src

Put source files in a separate `src` directory.
Remove LINUX flag from OSX build
Merge branch 'master' of github.com:TuckermanGroup/PINY
Merge branch 'hmat'
Remove obsolete platforms. Closes #8.
Try to reopen
Minor
Minor - syntax
Merge branch 'plumed' of github.com:TuckermanGroup/PINY into plumed