documented
Merge branch 'dev' into r_cmd_check

* dev:
  added .Rbuildignore file
  documented
  added comments for R stuff and less email sending
  ignore ..Rcheck
white space
removed mathjax local support to make it R passable
deleted mathjax dir
renamed lato open font license to be url friendly
moved data to the top subdir and removed layload (depricated)
removes license issues when checking
* checking S3 generic/method consistency ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking contents of 'data' directory ... OK
fixed collect being missing
fixed bad doc links
fixed bad doc params.  added a bunch of TODO's
removed inputVars
more @param issues fixed
another @param
another @param
white space
documented