Committing to new setup! Let the terror ensue!!!

modified:   Setup.py
new file:   lib/hbondsV5.py
copied:     setupHBonds.py -> new/setupHBonds.py
renamed:    setupBID.py -> old/setupBID.py
renamed:    setupBiased.py -> old/setupBiased.py
renamed:    setupHBonds.py -> old/setupHBonds.py
renamed:    setupSemiFlexible.py -> old/setupSemiFlexible.py
renamed:    setuphw.py -> old/setuphw.py
renamed:    submit.py -> old/submit.py
modified:   simulate.py