Added autogenerated config for jbrowse.
Spellingk
Moved bio jbrowse stuff to bio-webapp
Removed unused import
Added loads of lovely javadoc.
cleaned up property access with helper. Added tests.
Publish head.cdn.location to runtime js. Fixes intermine/intermine#593

This avoids the need to configure the cdn location in properties and in
JS.
Merge pull request #588 from alexkalderimis/jbrowse-zeroconf

Add JBrowse auto-configuration.
Merge pull request #607 from intermine/beta

Merge pull request #588 from alexkalderimis/jbrowse-zeroconf Add JBrowse auto-configuration.
GFF3Converter can skip defined list of GFF3 terms (excludes),
TAXON_ID.excludes should be defined in gff_config.properties,
Added testExcludes Unit Test to GFF3ConverterTest
Make sure that the generated js matches the configured properties
Merge pull request #636 from intermine/master

Master
Fixes #446
Merge pull request #637 from intermine/beta

Interaction Widget downloads more than 50 genes, Fix for #446
Merge pull request #633 from Arabidopsis-Information-Portal/master

GFF3Converter can skip (exclude) a defined list of GFF3 terms
Merge pull request #598 from alexkalderimis/hf-593

Fix for intermine/intermine#593
Fixed api token generation.
Merge pull request #643 from alexkalderimis/hf642

Fixed api token generation.
Fixes #664. This makes sure that python code is actually correct
Fixed a perl test while I was there