[PATCH 1/2] add initial peak quality for output
[PATCH 2/2] iRT paper for Sara
[FIX] add Chauvenets criterion as a CLI flag

- possible to turn on/off the use of Chauvenets criterion
Added MRMRTNormalizer::rm_outliers_ransac
further changes
template for FeatureSetFinder tool
[FIX-#740] Fixed bug in IDPosteriorErrorProbability.cpp

Peptide with score 0 (e-value 10^99) will be ignored in the model testing and fitting. If the score is in the method "get_score_" 0 the method will return NaN. After the method was called, the returned score will be compared to NaN. If it is so, the score will be ignored in the model and set to 1.

Committer: Petra Gutenbrunner <pg12@sanger.ac.uk>
[TEST #740] testing changes of bugfix for IDPosteriorErrorProbability

Extended ...Mascot_input, ...Mascot_input2 with PeptideIdentification. It includes a PeptideHit with the score 0.
Created for both testfiles new outputfiles.

 modified:   ../src/tests/topp/IDPosteriorErrorProbability_Mascot_input.idXML
 modified:   ../src/tests/topp/IDPosteriorErrorProbability_Mascot_input2.idXML
 modified:   ../src/tests/topp/IDPosteriorErrorProbability_Mascot_output.idXML
 modified:   ../src/tests/topp/IDPosteriorErrorProbability_Mascot_output2.idXML
[FIX #740] Fixed bug in IDPosteriorErrorProbability.cpp

Codereview: replace tabs with spaces, changed comments

modified:   ../src/topp/IDPosteriorErrorProbability.cpp
new data structures for spectrum spline interpolation
[FIX] removed redundant functions from AASequence interface
Merge branch 'develop' of https://github.com/OpenMS/OpenMS into fix-idpep-mascot

Conflicts:
	src/topp/IDPosteriorErrorProbability.cpp
[FIX] factoring out AASequence parse function
amend
[FIX] replaced DoubleReal and Real by double and float
[FIX] allow empty RT input

- OpenSwathWorkflow allows to not specify an iRT input file (it will
  simply assume that no iRT correction is requested and print a warning)
[FIX] move computation of overlapping features

- perform computation of overlapping features _after_ the boundaries are
  re-computed
[DEBUG] add option to get irt chromatograms for debugging
[FIX] pyOpenMS changes
[fix] replaced DoubleReal and Real in pxd files