In method LibraryAnnotationSheet.validate, continue when no annotation is available or a particular lane.
Fixed a bug in method Sample.addPairedReads, which did not test, whether a PairedReads object has already been added to the Sample object.
In method Reads.match, the file_type is irrelevant.
Added some "assert isinstance()" constructs to aid code parsing.
Improved the output of trace methods.
Improved some Python docstrings.
Added a Runnable.trace() method and improved the Analysis.trace() method.
Improved code around argument parsing.
Added a final Tuxedo.trace() call.
Renamed the bsf_rnaseq_tuxedo.py script to bsf_submit_rnaseq_tuxedo.py.
Renamed the bsf_check_libraries.py script to bsf_utility_validate_library_annotation.py.
Improved code around argument parsing.
Improved code around argument parsing.
Renamed the bsf_variant_calling.py script to bsf_submit_variant_calling.py.
Improved code around argument parsing.