Remove functions deprecated before 0.41

Commits showing when each function was deprecated.

https://github.com/adobe/brackets/commit/a9ab07c38e2175c46bccaa3c5ad8fb3e331b7499

https://github.com/adobe/brackets/commit/0c0218454c5dfea62ced4f3ec75de34bee13930c

https://github.com/adobe/brackets/commit/d2a8a827454efe4e692fa17730e36649cb19a1dd

https://github.com/adobe/brackets/commit/04b015e9d18a44b1f27c889c12d36b8abacc06cc
Merge remote-tracking branch 'upstream/master' into remove-some-deprecated
Remove unused references
Properly handle FS events for directory in the file tree.

An FS event for a directory with no "added" or "removed" means that
the directory contents should be reloaded. This change does that
and fixes #9510 and #9517.
Make sure an item being renamed is displayed in the tree.

Also makes sure that the item being shown is within the project.
Fix for #9423 and #9487.
Handle case matches on special characters (extra boost).

This is a fix for #3263.
Remove unused var (yay JSHint!).
Merge pull request #9619 from adobe/dangoor/9510-phantom-directory

Properly handle FS events for directory in the file tree.
Remove spy attached to getStyleSheetFromBrowser()
Merge pull request #9620 from adobe/dangoor/9423-rename-invisible

Make sure an item being renamed is displayed in the tree.
Merge pull request #9621 from adobe/dangoor/3263-special-case

Handle case matches on special characters (extra boost).
Removed unneeded code
Provide a strong boost for upper case matches.

This change feels more satisfying for #3263.

Also removes no longer used case match.
Merge pull request #9626 from adobe/dangoor/upper-case-match

Provide a strong boost for upper case matches.
- bump phantomjs version to 1.9.11 to avoid errors building brackets
Merge pull request #8992 from le717/remove-some-deprecated

Remove individual functions deprecated before 0.41
Merge pull request #9631 from adobe/ingo/fix-build-issues-with-phantomjs

bump phantomjs version to 1.9.11 to avoid errors building brackets