Add raxml submodule
Add mothur benchmark code.
Populate sources/ dir for mothur
Add abyss submodule
Tweak common instrument.sh to include more source fils
Merge remote-tracking branch 'remotes/origin/master' into dev
Change makefile for gzip
Merge remote-tracking branch 'remotes/origin/master' into dev
Merge branch 'master' into dev
Factor out commonality for gzip Makefiles
Merge branch 'master' into dev
RAxML: repoint submod to a fork
Add some of the script support for raxml
minor