Fix bug in Python wrapper, where a macro was being invoked before it was defined; this only occurred during compilation with assertions enabled. (Thanks to Haluk Dogan for the report.)
fixed some minor wording
disabled test_count_overlap to avoid too much memory usage
added 'end messages' to several scripts
updated copyright, and version to 0.4
moved normalize-by-min back to sandbox/
leave normalize-by-min docs around in case they're useful
callback
remove line
minor
for merge
maybe this will work...
python interface
added test for aligner
Merge in Titus' changes to ged-lab:master.
Merge branch 'refactor' into bleeding-edge
graph align works with counting hash now (-hashbits)
remove curve figure
remove curve figure
added diginorm with error correction...doesnt work yet though :-/