initial commit to the analyzeBrown branch with a basic image analysis routine
- fixed tissue detection
- added new measurements (min, max, stdDev)
- added dialogs for missing arguments
- added settings dialog
Fix issue with 32 bit Java on 64 bit Windows

- added checking in the registry for
HKEY_LOCAL_MACHINE\SOFTWARE\Wow6432Node\JavaSoft\Java Runtime Environment
in addition to HKLM\SOFTWARE\JavaSoft\Java Runtime Environment

- not thoroughly tested on system with this arrangment, but still working
on 64bit windows with 64bit Java
Update to overlays and results
- made overlay images optional
- added checkbox to setting dialog for overlay images
- ouput overlay image path in results files if selected
Added logging and better handling of errors
- added log file for errors
- added better handling of keyboard interrupt
Fixed bug with creating the output file during testing
Fixed image download, enhanced data retrieval

- fixed cancer v tissue parse error caused by id v name attrib issue on images
- fixed adding header when overwriting output file
- added retrieval of pt & staining data for cancers
- new data is embedded in exif and in output file