ignore packrat and Rprofile
added TMB source and Makefile
TMB is imported and shared libs loaded
removed unneeded `numderiv::`
added calcFmsy function and documentation
Added TMB dependency
TMB is now suggested not imported
removed .o and .so files
Ignore *.o, *.so
Removed TMB assessment files
added citation info
plotMortality does not add line showing eta_F
added Makevars
new version of roxygen2
made calcFmsy quieter
Added citation info
ignore bak files
Corrected .onLoad function name
Removed smalk.R
adding changes from master