Fixing a cleaving issue for variable density cases, which was missed before. Adding a 3 dimensional variable density case to the input files.

git-svn-id: https://gforge.sci.utah.edu/svn/uintah/trunk@52607 aee3fe44-4ef4-0310-ac56-cc817e9d0e43
Added lines back that were over written.


git-svn-id: https://gforge.sci.utah.edu/svn/uintah/trunk@52609 aee3fe44-4ef4-0310-ac56-cc817e9d0e43
new -> scinew for masks.  Still trying to track down the double delete
in SpatialOps for masks.

Try not inserting the mask into the map held by the local mask struct.

git-svn-id: https://gforge.sci.utah.edu/svn/uintah/trunk@52610 aee3fe44-4ef4-0310-ac56-cc817e9d0e43
Adding a failure point if invalid cell types are found.  One can turn
this off from the input file using the ignore_invalid_celltype from the
ups file.

git-svn-id: https://gforge.sci.utah.edu/svn/uintah/trunk@52611 aee3fe44-4ef4-0310-ac56-cc817e9d0e43
Clean up an issue with the new ignore_invalid_celltype flag.

Also, corners for periodic domains were causing problems.  Initialize
these cells to something valid since their value shouldnt matter in the
end.

git-svn-id: https://gforge.sci.utah.edu/svn/uintah/trunk@52612 aee3fe44-4ef4-0310-ac56-cc817e9d0e43
replaced tabs with spaces.

Reformatted output when SCIDebug componentTimings:+ is turned on.  It's easier to parse and 
added a descriptive header.



git-svn-id: https://gforge.sci.utah.edu/svn/uintah/trunk@52613 aee3fe44-4ef4-0310-ac56-cc817e9d0e43
Updated url address.

Changed all instances of SCIRun -> Uintah

Fixed bug if --no_compile option is used don't compile the code but run the tests.



git-svn-id: https://gforge.sci.utah.edu/svn/uintah/trunk@52614 aee3fe44-4ef4-0310-ac56-cc817e9d0e43
Clean up a memory leak if the task isnt scheduled.

git-svn-id: https://gforge.sci.utah.edu/svn/uintah/trunk@52615 aee3fe44-4ef4-0310-ac56-cc817e9d0e43
Minor fixes to particle sources

git-svn-id: https://gforge.sci.utah.edu/svn/uintah/trunk@52616 aee3fe44-4ef4-0310-ac56-cc817e9d0e43
updated plot scripts


git-svn-id: https://gforge.sci.utah.edu/svn/uintah/trunk@52617 aee3fe44-4ef4-0310-ac56-cc817e9d0e43
clean up temporary files.


git-svn-id: https://gforge.sci.utah.edu/svn/uintah/trunk@52618 aee3fe44-4ef4-0310-ac56-cc817e9d0e43
Include pressure and viscous forces in the analysis.

- added octave script to analyze the output from puda -ICE_momentum



git-svn-id: https://gforge.sci.utah.edu/svn/uintah/trunk@52619 aee3fe44-4ef4-0310-ac56-cc817e9d0e43
Fixed Char oxidation activation energy sign error. This will break the coal regression testssvn --helpsvn --help

git-svn-id: https://gforge.sci.utah.edu/svn/uintah/trunk@52620 aee3fe44-4ef4-0310-ac56-cc817e9d0e43
DataArchive:reduceUda_ReadUda()

  -added logic to ignore a variable if a process doesn't own the patch
   that the variable resides on.



git-svn-id: https://gforge.sci.utah.edu/svn/uintah/trunk@52621 aee3fe44-4ef4-0310-ac56-cc817e9d0e43
test
working integration of PIDX with uintah
finish merge