update orthodb to use protein id by default. added ID resolver. Refs #472


Former-commit-id: 5e0ac909ee4c9e298f2af716137ad2308afb371b
Merge branch 'dev' of github.com:intermine/intermine into dev


Former-commit-id: bab7ab85981a5decccfbde178336683368c2c2d9
latest pomme build


Former-commit-id: f59d91ba7a0e178ae6ac1642420d76ed013ab007
Merge branch 'dev' of github.com:intermine/intermine into dev


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Merge branch 'dev' of github.com:intermine/intermine into dev


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send an accept headers, like a good netizen


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Merge branch 'dev' of github.com:intermine/intermine into dev


Former-commit-id: 279405e26b8534f592895ae2df46d7e9a3d45c33
fix converter to handle resolved identifiers correctly. fix test


Former-commit-id: 6cb9d66b7e0af9a74f525ab80975d95005f49e99
resolve identifiers earlier to prevent duplicates


Former-commit-id: 6797d9eafa2d458eaf0617dcf718dfea6178dabf
add publication to data set. Refs #297


Former-commit-id: 994475c589babd3e6dfcfa05ec85c79a045a07b3
Added permanent token support to the userprofile


Former-commit-id: 66594d280dce6f17b5e7291d74b65ec312cb06a5
Aborted stub of UUID support


Former-commit-id: 2dd7cab840c6abe80255407a5d11c4a1d9c3ec16
Merge branch 'dev' of github.com:intermine/intermine into dev


Former-commit-id: c09f00e46c060d4ddb8934d9f613c88ec8344b93
More useful perma tokens, and an endpoint to inspect them


Former-commit-id: 757eb170e4f08e13fe594fc451a541ac168404d3
Cleaned up ProfileManager version loader


Former-commit-id: 64d2efa209f45bee570e349614c27d27e1ee1da6
Improved variable names, and javadoc.


Former-commit-id: cacba6cd7881b0935e28c193496c0cbbc504cb2a
Added version to model to prepare for migrations.

Also fixed some tests.


Former-commit-id: d2c3d493cfaf2dd41fc79f0786744ef434d24661
Forgot to add the service endpoint.


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Merge branch 'dev' of github.com:intermine/intermine into dev


Former-commit-id: fb4fdf86f99d3d16b30a4df6c7c5becd9bf5a85e
Refactored some common functionality to core


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