Save the password until the software restart again.
Representation of a fasta (.fai) index. This is a modified version of a similar class in Picard, but extended to handle loading by URLs.
Represents a sequence database composed of plain text files with no white space, one per chromosome, in a directory. This is the original IGV "sequence" format, replaced in favor of indexed fasta files.
The Class DataCollection is the main data storage object through which all of the data in a project can be accessed.
Change the name of some classes.
Change the name of some classes.
The Class FilterReports provides a table output for all information derived from a table in database.
An abstract class to represent an output report.
The Class ReportOptions displays a dialog containing the options panel for a report.
The Class ReportTableDialog is the generic container for all of the different types of report.
The Class SitesDistributionHistogram shows the distribution of RNA editing sites in a data store.
The Class SitesHistogramPanel displays an interactive histogram from any linear set of data.
The Class VariantDistributionHistogram shows the distribution of variant types.
The Class VariantHistogramPanel displays an interactive histogram of variant types.
A set of colour gradients that can be used for the software.
The help page integrated in the software, including a search engine.
The listener interface for receiving ActiveDataChanged events. The class that is interested in processing a ActiveDataChanged event implements this interface, and the object created with that class is registered with a component using the component's <code>addActiveDataChangedListener<code> method. When the ActiveDataChanged event occurs, that object's appropriate method is invoked.
The listener interface for receiving AnnotationCollection events. The class that is interested in processing a AnnotationCollection event implements this  interface, and the object created with that class is registered with a component using the component's <code>addAnnotationCollectionListener<code> method. When the AnnotationCollection event occurs, that object's appropriate method is invoked.
An interface to indicate that a class performs a long running task which can be cancelled.
The listener interface for receiving DataStoreChanged events. The class that is interested in processing a DataStoreChanged event implements this interface, and the object created with that class is registered with a component using the component's <code>addDataStoreChangedListener<code> method. When the DataStoreChanged event occurs, that object's appropriate method is invoked.