isolate the transport layer

Signed-off-by: Sébastien Boisvert <boisvert@anl.gov>
add an interface for active messages

Signed-off-by: Sébastien Boisvert <boisvert@anl.gov>
reorganize thorium source files

Signed-off-by: Sébastien Boisvert <boisvert@anl.gov>
isolate MPI in the transport layer

Signed-off-by: Sébastien Boisvert <boisvert@anl.gov>