KL operations isolated before transport.  This is actually a pretty large commit, but these things had to be done together.  The main thing is that I have taken all 'KL research' things (or almost all) and put them in a block before any transport.  I had to create realizations on the fly to do this.  In the future I plan to have the option to use the same realizations or create new ones for transport, but for now they will be different.  I need to figure out what to do with plotting from these realizations... maybe a flag to say which set of realizations to print from, the family over which KL is performed, the family over which radMC is performed, the family over which radWood is performed, etc.