Merge pull request #384 from weese/hotfix/snp-store

[FIX] snp_store - added some missing defaults
Merge pull request #383 from skrakau/master

Fix for BS tools
Merge pull request #388 from singerj/hotfix-knime-flexbar

[FIX] Fixed Info file and several arg parse problems, such as default values.
[FIX] Added missing option for argument parser.
Merge branch 'master' of https://github.com/seqan/seqan
[FIX] Fixed matchMateInfo access for develop.
Merge pull request #391 from skrakau/master

BS tools: Fix for develop and added missing option for argument parser.