Added protocols for Fluxcapacitor/BSQR next haplotype caller plus analysecovariants
 Changes to be committed:
	new file:   protocols/FluxCapacitor.sh
	new file:   protocols/GatkBSQR.sh
	new file:   protocols/GatkIndelRealignmentKnown.sh
 Changes to be committed:
	modified:   parameters.csv
	-update parameters for new protocols
	modified:   protocols/CollectMultipleMetrics.sh
	-probably bugfix --> before holidays X(
	modified:   protocols/GatkIndelRealignment.sh
	-protocol addition for completeness (this is needed for unified genotyper)
	modified:   protocols/GatkRealignerTargetCreator.sh
	-same as protocols/GatkIndelRealignment.sh
	modified:   workflow.csv
	-workflow update
minor edit to readme
Merge branch 'master' of https://github.com/mmterpstra/molgenis-c5-RnaGemini
Git hub origin beautify of parameters.csv fail using master file.
Conflicts:
	parameters.csv