Committed StructureIdentifier as a first step in issue #81.
Merge branch 'master' of https://github.com/biojava/biojava
Added some static utilities and constructors to ResidueRange.
Continuing to work on #81, changed StructureIdentifier.getString() to
StructureIdentifier.getIdentifier(), and made ScopDomain and Structure
implement StructureIdentifier.
Working on issue #81, created Substructure and UriIdentifier as two
Identifier implementations, and created the utility class Identifier.
Updated Astral download URLs, since the old URLs were removed from the
server.
Renamed Substructure to SubstructureIdentifier.
Gave SiftsResidue hashCode compareTo.
Wrote SiftsChainToUniprotMapping, SiftsChainEntry, and a corresponding
unit test.
Wrote a method IOUtils.print(String, File).
Fixed a really stupid error in
AlignmentTools.fromConciseAlignmentString.
adding new fields to be parsed
Merge branch 'master' of github.com:biojava/biojava