added semaphore cleanup to illumina
added missing 'continue'
fixed transactional behaviour
updated allowable read lengths
fixed up HelpTag flow. Was failing with error: Invalid property 'name' of bean class [edu.yu.einstein.wasp.daemon.batch.tasklets.analysis.WaspJobSoftwareLaunchTaskletImpl]: Bean property 'name' is not writable or has an invalid setter method. Does the parameter type of the setter match the return type of the getter?
* merge helptag-plugin branch manually
Merge branch 'develop' of http://frankfurt.aecom.yu.edu/git/wasp/aj into develop

fixed conflicts:
	plugins/helptag/src/main/resources/flows/helptag.prepFlow.v1.xml
fixed problem with attempting to send Job email.
updated transactional behaviour
fixed transactional issues and tested
replaced accidently removed method
fixed bug