OpenCGA integration with new BioData library
First version of the new Mongo schema (samples and stats not included)
Variant ID in Mongo generated manually instead of using HGVS
Variant stats and chunkId properly saved to Mongo
Merge branch 'develop' of github.com:opencb/opencga into feature/new-mongo-schema
Code for Monbase and SQLite excluded from classpath
First version of variant queries by region (with and without study)
Using datastore repository from VariantMongoQueryBuilder class
MongoDataStore properly closed
Filename not saved into the Mongo database, only fileId and studyId
Variant queries by region, region and study, gene, and ranking of most and least affected genes
storage: MongoDB credentials are passed to datatore library
Merge branch 'feature/new-mongo-schema' of github.com:opencb/opencga into feature/new-mongo-schema
pom: libs updated
storage: pom.xml updates
storage: dumb file os not longer created
XXXQueryBuilder renamed to XXXDBAdaptor
Samples format written to Mongo only when samples are stored. Duplicated effects are not longer stored.
QueryBuilder to DBAdaptor properly changed in POM file
Variant query by ID in Mongo backend