OPT : CSA computation in 4 different ways. Plus generation of binary file with CSA value for each slice
DOC: modify usage info and added todo
BUG: help option not working because default value in param
BUG: fixed but in non-OSX platform
BUG : bug using -b flag fixed
NEW : flag to smooth results with spline
DOC: added todo
NEW : new flag for saving figures. All TODOs done
TEST: added full test for sct_process_segmentation
BUG: issue #30. Now creates a tmp. folder and do everything inside.
BUG: small fix
BUG: issue #30. Now creates a tmp. folder and do everything inside.
OPT: major changes. Now registration to template is done with a 2-step approach using the cord segmentation for improved accuracy.
sct_register_straight_spinalcord_to_template has now been replaced with sct_register_multimodal
OPT: now estimating center of mass of the centerline/segmentation to address issue #33.
BUG: small fix
DOC: small fix
NEW: new function to convert binary segmentation to trilinear. Include smoothing along centreline to remove step-effects (see issue #31)
REF: small changes
BUG: forgot to turn debug mode off
DOC: made feature visible