output_name neds to be set to None, not False... output filenames automatically generated should work ok now
bumped version
line 582 "self.n_bands, self.n_obs = self.observations.shape" instead of "self.n_obs, self.n_bands = self.observations.shape" otherwise "assertion error" in line 586
Merge pull request #5 from maxchernet/max

line 582 "self.n_bands, self.n_obs = self.observations.shape" instead of...
Some minor changes to time reporting etc.
First steps in solving the Hessian for images, still some way to go
Saved the gradient of the observation operator to use with the Hessian
Save the gradient of the observation operator, but remember to do it **by band**
Linear hessian approximation is done. Will now check to see if it breaks down or something
Linear part there, but not wholly tested, need to check memory usage hacks I did before on master
Merge branch 'master' of github.com:jgomezdans/eoldas_ng
this merge has stuff that wasn't here before, I suspect that stuff I did in Sheffield...
Not quite there yet....
Tried to return uncertainty from the first_guess method in the prior. Only issue is that if we have a sparse inverse covariance matrix, one would need to invert it and fish out the main diagonal elements, which at the moment, I will not implement
I have added an option to the imageGP class so that the first guess returns both the MAP estimate (as before), as well as the uncertainty. The uncertainty is basically an independent estimate for each parameter where we have observations. For where we don't have observations, it is arbitrarily set to the maximum uncertainty in for that parameter, as otherwise, it would be set to 0 or to some weird arbitrary parameter that might need to be scaled etc.
The machinery for doing several "first guess" runs, where uncertainty is used in weighting these different starting points (x0). The uncertainties are also important, as wel can combine these to provide some preconditioner ($\mathbf{B}^{-1}$). In this commit, the actual changes are commented out, as the codes needs to deal with a number of different issues in order to work as advertised (namely, the different descriptions of prior uncertainty etc). I think that we just need to create a sensible sparse representation of the prior if this is not provided in the Prior.__init__ method, which simplifies things inmenslely.
Linear approximation to obs op hessian is now apparently working
Hessian calculations improved for the MRF model (we now deal with non-square state spaces), and to the observation operator Hessian, implementing just the linear part of the Hessian, not the non-linear "correction term", which appears to be wrong in the paper. There are also a number of changes in the inversion of the Hessian using the LU sparse decomposition that haven't really been properly tested...
A few minor bugs ironed out in the uncertainty estimation
changed readme