cleaning up sda.particle for public consumption
Updates to utils/R/read.output.R and utils/R/utils.R
add workflows for parameter data assimilation and treering state variable data assimilation for the paleon course
merge
year selection now works.
iterations set to 3000 by default
don't show ed.nc when running sipnet and vice versa
added 'inputs' and 'IC' as optional arguements to write.configs.SIPNET to allow us to pass initial conditions (IC) and a met file path to the function. inputs is presumed to be a list, with the met arguement being inputs, but other inputs could be passed as well
minor tweaks for PalEON course, mostly to workflows and tree ring code
small changes to the sda code during the PalEON lecture
added biocro module refs #1234
fixed typo
move biocro modules from modules to models directory
moved models/template to models/biocro, added write.configs.BioCro.R refs #1240,1234
added documentation to the bugs.rdist function
modified variance decomposition plots to support n analyses with user specified color and shape.
merged carl's code to generalize popsicle plots, refs #877
added first draft of a function that will enable duplication of an existing pft; refs #876
merge
untested port of my 'emulator' package into PEcAn
quick and dirty porting of Carl's reinterpretation of my emulator-based data assimilation into modules/assim.batch. This code probably won't run as is and there's definitely a few pieces of redundant code that need to be consolidated. At some point we need to go through this code with a fine-toothed comb, clean it up, generalize it, and couple it to the database