Squashed commit of the following:

commit f5d41361a543f428fc867a66455fdcf2bf8f5004
Merge: 5e1a2d6 6850d96
Author: Dmitri Smirnov <d.s@plexoos.com>
Date:   Sun Sep 7 22:25:06 2014 -0400

    Merge branch 'ds-ftune' into ds-hft-dev

commit 5e1a2d6ca6e6eb33dbf0666132c96fa5c6a15b3f
Merge: fa099c4 e073430
Author: Dmitri Smirnov <d.s@plexoos.com>
Date:   Sun Sep 7 22:24:40 2014 -0400

    Merge branch 'ds-hft-tree' into ds-hft-dev

commit fa099c4f9ab58b06d266bc7b607fe8d637e4d911
Merge: 0708eda c5c0578
Author: Dmitri Smirnov <d.s@plexoos.com>
Date:   Sun Sep 7 22:24:24 2014 -0400

    Merge branch 'ds-ist' into ds-hft-dev

    Conflicts:
    	BigFullChain.h

commit 0708eda9a0db877754b5ddf66c05dddcfb99c99a
Merge: 339ec68 9dc2cf1
Author: Dmitri Smirnov <d.s@plexoos.com>
Date:   Sun Sep 7 22:23:40 2014 -0400

    Merge branch 'ds-pxl' into ds-hft-dev

commit 6850d961cfe831d99fb06263f72a3fe84b372301
Author: Dmitri Smirnov <d.s@plexoos.com>
Date:   Thu Jul 17 13:39:49 2014 -0400

    Changed -Opt to NoOpt as the former does not seem to have any effect

commit e073430319649faeec0dcf625bfb87c052971575
Author: Dmitri Smirnov <d.s@plexoos.com>
Date:   Thu Jun 12 18:21:53 2014 -0400

    Added boost libraries to be loaded with HftMatTree option

    Added boost_program_options because StHftPool/HftMatTree depends on it
    Added boost_regex because StHftPool/EventT depends on it
    Added boost_filesystem because StHftPool/HftMatTree depends on it

commit c5c0578ca56e1ad10f1d7a93930c8b58715d46e0
Author: Dmitri Smirnov <d.s@plexoos.com>
Date:   Wed Jul 16 14:41:11 2014 -0400

    Added BFC options for full IST hit reconstruction i.e. raw hit -> cluster -> hit. Also added options for future IST
    modules istFastSim, istQA, and istCalib

commit f2de4b851168208dbe12e3f730cc45451c0fc376
Author: Dmitri Smirnov <d.s@plexoos.com>
Date:   Tue Apr 22 16:27:17 2014 -0400

    Change to get rid of doubly defined StiMaker attributes

commit 9dc2cf1a5451483d68133049f0c39d92df0a0b31
Author: Dmitri Smirnov <d.s@plexoos.com>
Date:   Sat Jul 12 21:56:24 2014 -0400

    Removed redundant dependancies by taking advantage of dependant option chains

commit 841d0d119ba4b99f2fc35b554aa767bff119fd5b
Author: Dmitri Smirnov <d.s@plexoos.com>
Date:   Thu Jun 12 18:23:06 2014 -0400

    Add explicit dependence of PxlHit on PxlCluster on PxlRaw packages

commit 339ec68c6f41daa511be483e588de4fd4b3add71
Author: Dmitri Smirnov <d.s@plexoos.com>
Date:   Wed Jul 16 14:40:48 2014 -0400

    Updated sstHit option to do something useful

commit c5c3ec68836d2b9a5809efa31ff0f2fab7bf3308
Author: Dmitri Smirnov <d.s@plexoos.com>
Date:   Tue May 20 16:49:07 2014 -0400

    SST changes from Jonathan Bouchet

commit e76ddebdad404f6af9497874892ed191a4075382
Author: Dmitri Smirnov <d.s@plexoos.com>
Date:   Wed May 7 17:52:00 2014 -0400

    Added option to create a tree used in event display