Fixed path issue for input jar file
Updated README.md
Updated .gitignore
Updated README.md
Updated README.md
Entry points is a set now, not a flag
First cut at intermediate repr
First cut of basicBlocks looks good

Not rigorously tested.
Working on IR for byte codes
Chaged .gitignore
Changed stuff
Removing .settings from repo
Merge branch 'develop'

Conflicts:
	.settings/org.scala-ide.sdt.core.prefs
	resources/ASMCode/asm/ClassDump$.class.txt