Improved --compare option for PBclust.py (compare the first PB sequence to all others)
- added progress percentage for building distance matrix
- change output cluster format
Improved handling of PB sequence names during clustering (PBclust.py)
added documentation for PBclust.py
added improvement from Pierrick-Craveur in displaying map color scale
Fixed issue #6 / Pierrick-Craveur added documentation and test for -x and -g options
Fixed #12 - added a more permissive license (MIT)
added encoding in header
Edited docstring header.
Updated requirementsx
PBassign.py: migrate from optparse to argparse module
PBcount.py: migrate from optparse to argparse module
Edited typos
PBstat.py: migrate from optparse to argparse module
PBcount.py: edited typo
PBclust.py: migrate from optparse to argparse module
Fixed #8 - reference to original papier for PBs definitions
PBclust.py - added ward method in hclust()
updated documentation
improved intro on PBsx