update make_docs script to deal with directory with spaces
updated getFullJacobian to work in either amount or conc mode, added config option, fixed incorrectly named method
deprecated classes
This is a test
This is a test
Merge pull request #17 from alexdarling/develop

Develop
added new Runge-Kutta-4 integrator
update docs
merged in some changes from testing updates
Merge branch 'tmp' into tmp2
update docs
update docs
added libSBML 5.10.2
fix bug getting stoich matrix when cons conv is enabled
fix bug conserved moiety ids and values not being returned
fixed bug with CM ids displayed twice in keys
merged Alex's documentation updates
clean up getTempDir(), add config values for temp dir and log file
make getCurrentSBML more reliable, bump version, rename getStoichiometryMatrix
fixed issues with tmp path and global var cleanup, fixed testing.py for stoich rename