working toward external file format to NexSON converter
nexus to nexml working
ot:NexSON export working
checking the upload ID to assure that it can be a reasonable directory name
documentation, checks that the ot:nexson is the first output
earlier checking of inputformat
minor fixes to ncl install script
test script and documentation in to_nexml function
documentation of the file conversion service
explanation of how the conversion works
added a 'content' argument for cases in which a file is not uploaded. This should facilitate an user pasting in a newick string into an edit box rather than specifying an input file
Watch for unwanted encoding of 'ot:nexson'
Refactoring for simplified Nexson (page load)
Updated metadata viewing/editing
Refactored tree operations
More tree and OTU operations with revised Nexson
Simplified tree-rooting logic
Forcing edge lengths to numeric.
Pluralizing any collections broken by Badgerfish
Pluralizing ot:curatorName and adding name on save