fix examples/util/src/outputVtk.cpp for octree examples
Change the polygon selection policy and the definition of boundary ID as follows:
  1. All polygon groups are searched by Polylib::search_polygons method.
  2. The polygons whose exid between 1 and 255 are used for intersection calculations.
  3. Each polygon's exid is adopted as a boundary ID.
modify configure.ac and INSTALL example
fix file permissions and delete unnecessary files
remove an extra ";" in CutSearch.h
calculate TargetTriangle::dot_normal_vertex0 in double precision
delete include/Version.h
r20 merge szks fix
r21 check packaging on branch check_on_K [ver 3.1.8]
r22 update year 2014 for copyright [ver 3.2.0]