More code
Here have code
TODO notes
setup.xml function dev
Merge branch 'devel' of github.com:mariogiov/scilifelab_pipeline into devel
Start building piper execution command
Create piper command lines; notes for bugs to fix
Migrated logging functions from scilifelab repo
Added config file parsing
Build qscript-based Piper command lines
Notes for fixes to make
Fix projects_to_analyze for loop bug
Bugfix
Add pm.conf parser
Change FlowcellRunMetricsParser to local copy, remove cruft
Improved code clarity, bugfixes
Copy over parsers from scilifelab.bcbio module. Boy I should clean these up.
Cleanup, notes, add try-except
Notes/TODO
load_xml_config() instead of yaml; add more logging