python version first commit
move def from main to lib files
fix align and revcomp issues
fix revcomp issue
The Bayesian model is connected to the python version
Removed tracked pyc from repo
Small issue finding the path to the R scripts
add length distribution
merge
Warns now about specific missing libraries also about Rcpp and RcppGSL
Merge branch 'master' of /home/ginolhac/Dev/mapDamage
add with statements
Merge branch 'master' of eos:/home/ginolhac/Dev/mapDamage
add check for corresponding references BAM-FASTA
add reading a BAM from stdin
Gracefully exits when there is problem loading the reference
fix writing fasta alignments
Merge branch 'master' of eos:/home/ginolhac/Dev/mapDamage
disabled stats when damage levels are too low
Add support for downsampling input.

Adds the ability to downsample input records to either a fixed
number of (randomly selected) records, or to a fraction of the
input records.