Annotations / Add genomic locations to data: fixed sort order and changed a column name from 'chr' to 'chromosome' to make compatible with other scripts.
Merge remote-tracking branch 'upstream/master'
Build 2.8.0
Merge branch 'master' into release
Version back to 2.8.0
Build 2.8.0 again
Merge branch 'master' into release
Build 2.8.1
output fix for all BEDtools tools
Merge remote-tracking branch 'upstream/master'
Output fixes for bedtool tools
Added a new parameter (significance level) to copy number segmentation tools.
Count overlapping CNVs updated to use the new Database of Genomic Variants ( http://dgv.tcag.ca/dgv/app/home ).
Merge remote-tracking branch 'upstream/master'
Remove intact and reactome tools.
Script for migrating old contents2.txt annotations to new directory and
yaml format.
Changed default parameter value for CNA-seq segmentation tool.
Merge remote-tracking branch 'upstream/master'
Drosophila melanogaster added.
Merge branch 'master' of https://github.com/chipster/chipster.git