Brought SaveAlignedPDBs.py up to date
Merge pull request #220 from leeping/master

Brought SaveAlignedPDBs.py up to date
Modified setup.py according to Robert's instructions
Merge pull request #224 from leeping/master

Modified setup.py according to Robert's instructions
Fixed script to get and plot dihedral angles
Updated the tutorial to include a working GetDihedrals script and updated Tutorial.pdf to reflect the changes
Fixed function call. Updated help text. Fixed indentation
Fixed memory allocation problems in permutation part of LPRMSD
Merge branch 'master' of github.com:SimTk/msmbuilder
Merge pull request #226 from leeping/master

Fixed LPRMSD bug.
Merge pull request #225 from mpharrigan/tutfix

Update GetDihedrals.py for tutorial
invert overflow fix