Added libapache2-mod-php5

As per
https://github.com/epicplayground/storm-deploy/commit/f5b5d5b92f2a1089d3
ccb3d7dcddf1c16484caf5
Added missing log4j dir

As per
https://github.com/epicplayground/storm-deploy/commit/b6a7e018d2683b2ef3
8c9e126309bbf8e44fba59