Initial panPan1 browser.
Merge branch 'master' of chinhli@hgwdev.cse.ucsc.edu:/data/git/kent
Adding more progress to the makedoc for the new assembly.
Fixing bug in rFindMulti that was making bigBed name index crash on uc021tvv.1 in ucscGenes.bb
Adding routine to do relatively efficient finding of multiple names in a bigBed name index,  and giving bigBedNamedItems a command line option to do this.
Reducing verbosity a bit.
Making a lot of the arithmetic 64-bit so that it doesn't overflow on files with lots of items.
Release log update
Encode release log update
Updated the URL for the euroNode (redmine #3135)
Merge branch 'master' of steve@hgwdev.cse.ucsc.edu:/data/git/kent
move hasProtocol() function from common.c to net.c (code review #10278)
Merge branch 'master' of braney@hgwdev.cse.ucsc.edu:/data/git/kent
Added trackHandler for ucscRetro v4 track tables.
Removed oldScore column as no longer needed and renamed oldIntronCount to alignGapCount.
Removed oldScore column as no longer needed and renamed oldIntronCount to alignGapCount in ucscRetroInfo table so change code and variable names to match.
Removed oldScore column as no longer needed and renamed oldIntronCount to alignGapCount in ucscRetroInfo table so change code and variable names to match.
Removed oldScore column as no longer needed and renamed oldIntronCount to alignGapCount in ucscRetroInfo table so change code and variable names to match for details page display.
pulled a statement outside a loop so it only writes to the file once at the end
added genome-euro to realTime.csh and adjusted a few other scripts to enable it.  added verbose mode to realTime.csh so you can get machine names instead of just a dot