RE 7011 Fixes select cell bug

The SelectCellOfType and SelectCellWithForm algorithms now actually
re-index the peaks with the new UB matrix, if the Apply parameter is
true.  Previously, a transformation was applied to the previously
calculated hkl values, however, in some cases the transformation
applied was not correct.

 refs #7011
Merge remote-tracking branch 'origin/bugfix/7011_select_cell_bug'