another update for Rene
changed shoe_area_rating.py
Merged with Rene and added a totally different file structure. Merge branch 'master' of https://github.com/renezeto/protein

Conflicts:
	protein.cpp
	pyplots/extrema.py
	showatp.py
Merge branch 'master' of https://github.com/renezeto/protein
Merge pull request #10 from jeffschulte/master

New