Release log update
Encode release log update
Correcting links on marmoset (calJac1) track description pages
Merge branch 'master' of hgwdev.cse.ucsc.edu:/data/git/kent
Revert "Added a couple ENCODE Regulation summary tracks to hgVai.  refs #11461"
This reverts commit c65b04d176ad125c1eddd777fb8befd481bdba2c.
I decided that hgVai's support for regulatory tracks is not sufficient to roll
out to the RR because annoFormatVep isn't yet smart enough to add regulatory
consequence SO term (regulatory_region_variant) when one or more of these overlap.
Also, there really should be some filtering - I suspect the false positive rate
will be too high otherwise because the Tfbs cover 1/8th of the genome.  The next
release to the RR is not until Jan. 21, more than a month from now.  I'll bring
this back after the v293 build is tagged.
refs #11461
Adding a bunch of functions to help work with output of jsParse.
INcreasing buffer size for sql query in edwFileAllIntactBetween.
Program to build a table based on ENCODED experiments seems to work.
Separating out generic portable JSON parser from Genome Browser specific stuff in jsHelper module, creating jsonParse module.
Splitting jsonParse out of jsHelper.
Removing jsonGlabalsHash from library routines.  Now it is restricted to hgTrackUi.
Merge branch 'master' of hgwdev.cse.ucsc.edu:/data/git/kent
add a test for repsAsMatch pslCDnaFilter flag
Revert to no motif display in dense mode for now.  Change Motif section label as per QA to clarify it matches strand.  refs #9092
Merge branch 'master' of hgwdev.sdsc.edu:/data/git/kent
Adding hyperlink and hyphen per code review. refs #12250
Adding ucsf brain methyl tables to tables ignored. refs #2540
don't create lock files when using initialLoad to load a database.   The
database will still me locked.  #10357
Merge branch 'master' of hgwdev.cse.ucsc.edu:/data/git/kent
adding preliminary gene interactions track to pub group