Adding the document class
Adding main TeX file and general documents

The main TeX file includes other files as needed. Also its contents
are supposed to be customized completely.
General documents include glossary defenitions, abstracts (in Persian
and English), preamble, and pointers to thesis chapters.
Ignoring files which end to ~ sign (temporary files)
Adding the thesis guide and its bibtex definition as sample resource
Ignoring the synctex file