Updated config/deploy.rb with new repo location
Got rid of oink (error in library; not necessary). Added :dependent => :destroy to hmm_profile model
Added dependent: :destroy for hmm_alignments to hmm_result_row model.
Added dependent: :destroy:s to protein
Added forgotten has_many declaration to protein model (protein_counts)
Downgrade to capybara-webkit 0.13.0 because of problems with capybara 2.0
Merging from stable
Gemfile.lock