Initial NGSpipline README commit
Initial commit of pipeline scripts - BETA
Edited README so that it now contains TODO info and deleted TODO from scripts
Added  to Pipeline_v2.sh to enable number of cores used to be easily chanegd, will in the future want to add this as a command line option
Updated the instructions of the variant calling only to show that custom annotation could be performed
Updated Pipeline_v2.sh so that bam list now contains the Mode type in the file name (as it already does in the variant calling only script
Updated README with ToDo list. Also updated Pipeline_v2.sh so that the sampleFile.txt also contains the mode that the variant calling was done
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