new file:   OutSources/stripedSW/ssw_cpp.cpp
	new file:   OutSources/stripedSW/ssw_cpp.h
Add OutSources/fasta/
Add TangramBam/
Init TangramBam
Get SSW alignments (TangramBam)
Get the best alignments
Attatch ZA -- first version
Modify bam header
Clear up the buffers
No need "chr" in vcf
Check the reverse complment bases
Merge branch 'bwa'