Added user documentation to Run page
Adjusted CSS & structure to accommodate documentation
Re-organize HTML files to only have one shared <body>
Now uses templates to generate the 3 HTML files (untested)
Trimmed HTML files to work with new integrate.py

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The sim.html, sim_js.html and sim_coffee.html all had a lot of
duplicate code in the body section.  compile/ntegrate.py had already
been modified to use the common template_body.html to generate these
three files along with the three *_head.html files.  However, the
actual template_body.html and *_head.html files still needed to be
modified to fit the new process.

modified:   coffee_head.html
Removed common body code.

modified:   js_head.html
Removed common body code.

modified:   template_head.html
Removed common body code.

modified:   template_body.html
Removed varying head code (each *_head file---template_head, js_head,
and coffee_head---have their own head code to be inserted into the
template_body.html file).
Split template on comment instead of head tag
Updated README to match new integration process
Fixed > in HTML text to be &gt;