Expanded sequence and cages cached
Scores cached and reused
grid of scores used instead of specific pvalue
old version of extract_fasta removed
fix bug in roc_curve which counted total number of positives and negatives wrong when some of marks had no objects matching them
hgnc_id and entrez_id are numbers, not strings
script for calculating auc from curve points in file
old stuff removed from extract_fasta
polyN-ning method moved to another file. fasta now extracting only transcripts having expression higher than threshold
fix for integer entrezgene ids, fix for output (was stdout now logger), kozak uses complement instead of String#tr
lots of changes for statistics_by_motif