added byebug to gem
Updated dia model with the new set of fields for taxon, protein and enzyme, thus deleting the hierarchical model
renamed test files
Changed name of HmmDbHit to DBEntry in dia
renamed :hmm_db_hit and :hmm_db_hit_pdb to :db_entry and :db_entry_pdb
Adding trees for RNR subclassification
Adding svg file for RNR subclassification
renamed factories generated in spec/factories/factories.rb and fixed failing tests for them. Preparing for renaming HmmDBHit table to DBEntry
Migration for renaming table hmm_db_hits to db_entries. Had to change the model to DbEntry as well for the migration to go through.
Fixing tests, models, views, controllers, helpers, routes, file_parsers and sample_data
Fixing tests, models, views, controllers, helpers, routes, file_parsers and sample_data. Closes #58
Merge branch 'hmmdbhit_to_DBEntry' of github.com:erikrikarddaniel/pfitmap into hmmdbhit_to_DBEntry
Merge branch 'master' of github.com:erikrikarddaniel/pfitmap
Values kept chaning in tests for pfitmap_release.rb which uses the biosql.
new gem version of capistrano and mime-types
Created failing tests for new taxon model
Migration for adding columns to Taxon
added explanation on how to fill in Taxon table
Test for biosql function that takes in a list of ncbi_taxon_id and returns a list of taxon hierarchies
Can send a list of ncbi_taxon_ids to biosql and receive the hierarchy for all of them