Updated reference for citing RepeatSeq use.
Added basic explanation of RepeatSeq output formats
Update README
Update README
Perform work for repeatseq in worker threads, one per core. Should have byte for byte equivalent output to non-parallel version.
Fix issue with parallelization - separate threads do not write to the correct repeatseq file object (oFile).
Create FASTA reader for each thread because sharing FASTA reader state (file reader position) occasionally corrupts reads.
updated error model; error rate override
Update version info
Update version info
Merge branch 'master' into parallel, updating error model.
update version to reflect merge w/ parallel branch
Update repeatseq.cpp
Update repeatseq.cpp
Update README
Update repeatseq.cpp
update repeatseq.cpp to disable local error rates
update version info
Update README
Update README