Fixed test so that it would still delete residual files in case of an
exception while testing
Removed wrong dependency to commons logging, replaced for sl4j (the
loggin framework used in the whole framework)
Removed dependency to sesame-runtime. This is not good since it includes
EVERYTHING and doesn't allow to understand the fine grained dependencies
of ontop (which are just a few) that are needed to build the manifest of
the protege plugin
Added the missing fine grained dependencies: sesame-repository-manager
(for tests) and seasme-parser-sparql
Removed all dependencies to jena related libraries
Removed dependencies that were not used by andybody
Added fine grained sesame dependnecies
Updated manifest to avoid including groovy

The manifest inclusions are still dirty but seem to generate a good
MANIFEST.MF and hence, a running protege4 plugin
Merge remote-tracking branch 'origin/develop' into develop