Implemented a number of improvements to genbank parsing

The main change is to remove voucher information that does not include info about the host species
There are cases where the "host" tag only contains info about the voucher specimen.
By removing this, it allows the possibility of locating host information in a different tag
I also added word bondry tags to the regex that removes words that are not part of the host name
This was necessary because things like "of" can appear as part of a host name
renamed these folder as 130819
Attempted to handle cases where some sequences do not have genbank style ids, though it still doesn't seem to be working

I was using this script to deal with a file that had some new sequences not downloaded from genbank
which did not have the gi|\d{9}|gb|\w+.\d| format that this script expects

The changes I made were not sufficient to make it handle these correctly, but they don't
seem to be hurting in cases where they do have the genbank formatting, so I'm leaving them
Adding the final PDF versions of my blog posts
Removing deleted files
replacing sequences that have simple accession numbers for ids with ones with full fasta headers
minor corrections to host info
updated trees based on latest edits to metadata
Replacing mac newline characters with unix ones
Added a few commands to clean up folder
corrected order of commands
updated version of tree
changing linebreaks
changing linebreaks
changing linebreaks
updated tree
Adding pdf versions of blog posts
Files used to analyse diversity of fungal partners
A little script to make sure that all members of a range of accession numbers are present
updating missing files