Adding module loads to rna scripts
Simplified AlignWithBWA and added merge by sample
Moving check of ref to utility object
Merge branch 'master' of github.com:johandahlberg/piper
Rename BamUtils to AlignmentUtils
New unified alignment workflows
Added / to paths
Changes for namespace of bamutils -> alignmentutils
DNAGeneralPipeline with merging
Finished new general dna workflow
Adding new alignment wf to all other workflows
Merge branch 'newAlignmentWorkflow'