Add piped task bwa.Bampe. Proof of concept
Update chr11.dict
Add CombineVariants
Fix dependency in IndelRealigner
Add SelectVariants wrapper
Add several GATK wrappers
Add seqcap pipeline. Add document structure
Add code examples and HaloPlex image
Update test_wrappers to use data in data-folder. Update various task. Change fn -> path in some places
Remove print reads