Fixed bug in gpi11iterator it yielded a gpi10 rec by mistake
Deprecate the AlignAce wrapper, the software is not available anymore.
Move warning & update docstrings.

Warning from 'from Bio.Motif import Applications' not nice.
Also deprecate AlignACE & CompareACE wrappers in Bio.motifs
Update deprecation notes for AlignACE & CompareACE wrappers