Improvement to variantIdFilter
Merge pull request #80 from Bonder-MJ/master

Updat in .pom for molgenis-core, and fixes in matrices
Log interval of aligner
minor refactor
fix file size checker, warning on duplicate variants
Added extra test to trityper
Merge branch 'master' of https://github.com/molgenis/systemsgenetics.git
Merge pull request #81 from PatrickDeelen/master

Some minor genotype reader stuff
fix find bugs
fix find bugs
Merge pull request #82 from Bonder-MJ/master

Findbug fixes
Update readme genotype aligner
Merge pull request #84 from Bonder-MJ/master

Findbug fixes and matrix handeling
Improving genotype aligner, added keep variants not in ref option
Merge branch 'master' of https://github.com/molgenis/systemsgenetics
Merge pull request #83 from PatrickDeelen/master

fix find bugs
Merge branch 'master' of https://github.com/molgenis/systemsgenetics