Fix the M. ruber test

[Tracking bug 21562]

[git-p4: depot-paths = "//depot/software/bioinformatics/tools/GenomicConsensus/": change = 119996]
       Fix the tools (CmpH5Reader API change)

       [Tracking bug 21562]

[git-p4: depot-paths = "//depot/software/bioinformatics/tools/GenomicConsensus/": change = 120021]
       CmpH5Reader API change (movieTable -> movieInfoTable)

       [Tracking bug 21562]

[git-p4: depot-paths = "//depot/software/bioinformatics/tools/GenomicConsensus/": change = 120073]
Add CHANGELOG

[Tracking bug 21562]

[git-p4: depot-paths = "//depot/software/bioinformatics/tools/GenomicConsensus/": change = 120177]
Get on board with Pat's filesystem layout for the parameters directory

[Tracking bug 21562]

[git-p4: depot-paths = "//depot/software/bioinformatics/tools/GenomicConsensus/": change = 120178]
Fix jenkins build

[Tracking bug 21562]

[git-p4: depot-paths = "//depot/software/bioinformatics/tools/GenomicConsensus/": change = 120223]
Wasn't quite adhering to the spec for the -P flag.

Update behavior, doc, and tests.

[Tracking bug 21562]

[git-p4: depot-paths = "//depot/software/bioinformatics/tools/GenomicConsensus/": change = 120300]
GenomicConsensus version 0.6.0

[Tracking bug 21562]

[git-p4: depot-paths = "//depot/software/bioinformatics/tools/GenomicConsensus/": change = 120326]